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Center for Bio-Image Informatics
Engineering, Biology and Computer Science, working together.
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Automatic Nuclei Counter plug-in for ImageJ
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3D Nuclei Detector
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About the Center for Bio-Informatics
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About the Center for Bio-Informatics
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Image Analysis - Microtubules
Tracking Microtubules Using Deformable Trellis
Benchmark For Evaluating Biological Image Analysis Tools
Microtubule Dynamic Instability
Evaluating the Performance of Microtubule Tracing in Live Cell Images: Methods and Ground Truth
Microtubules Research
Image Analysis - Retina
Benchmark For Evaluating Biological Image Analysis Tools
Image Analysis Research
Publications
Publications
UCSB Bio-Segmentation Benchmarking
Biological Research - Retina
Retina Research
Retinal Images Overview
Retina Structure
Retinal Detachment Surgery
Retinal Cell Biology
Biological Research - Microtubules
Retina Research
Microtubules Dynamics Collection
Publications
Publications
UCSB Bio-Segmentation Benchmarking
Image Processing
Benchmark For Evaluating Biological Image Analysis Tools
Image Analysis Research
Microtubules
Tracking Microtubules Using Deformable Trellis
Benchmark For Evaluating Biological Image Analysis Tools
Microtubule Dynamic Instability
Evaluating the Performance of Microtubule Tracing in Live Cell Images: Methods and Ground Truth
Microtubules Research
Retina
Benchmark For Evaluating Biological Image Analysis Tools
Image Analysis Research
Biology
Retina Research
Retinal Images Overview
Retina Structure
Retinal Detachment Surgery
Retinal Cell Biology
Microtubules
Retina Research
Microtubules Dynamics Collection
Retina
Retina Research
Retinal Images Overview
Retina Structure
Retinal Detachment Surgery
Retinal Cell Biology
Database
Database Research
Database Research and Integration
Data Mining
Biosegmentation
Grants
NSF - Uncertain Data Management
Publications
People
Working with Uncertain Data in Exploring Scientific Images
NSF - Complex Boiological Structures
People
Publications
Computational Challenges in the Discovery and Understanding of Complex Boiological Structures through Multimodal Imaging
NSF - Uncertain Data Management
Publications
People
Working with Uncertain Data in Exploring Scientific Images
NSF - Complex Boiological Structures
People
Publications
Computational Challenges in the Discovery and Understanding of Complex Boiological Structures through Multimodal Imaging
Downloads
Databases
Bisque Database
Client-side
3D Nuclei Detector Matlab Toolbox
Microtubule Quantitative Analysis Tool
bioView3D
Scientist's Digital Notebook
bioView
BioImage Convert
ImageJ plug-ins
BQBisqueJ
Automatic Nuclei Counter plug-in for ImageJ
Large display wall - BioWall
iWall
Developer tools
BQC++Toolbox
BQJavaLib
BQMatlabToolbox
Bisque Database
Digital Notebook
BioImage Convert
bioView
BioView3D
BQBisqueJ
Automatic Nuclei Counter plug-in for ImageJ
iWall
BQMatlabToolbox
BQJavaLib
3D Nuclei Detector
BISQUE
Description
On-line Database
Documentation
Video Demos
Bisque workflow video demos
Active Users
Outreach and Training
Summer Internship
2009 Summer Internship
2008 Summer Internship
Summer Internships
2009 Summer Internship
2008 Summer Internship
Courses
Workshops
2008 - Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining
2006 - Workshop on Multiscale Biological Imaging, Data Mining and Informatics
2005 - BioImage Data Mining and Informatics
Events
Project Meetings
2009-03-06 - Alphan Altinok
03/18/2008 - Swapna Joshi
04/23/2008 - Erkan Kiris
02/27/2008 - Dmitry Fedorov
02/20/2008 - John O'Donovan
03/25/2008 - Kris Kvilekval
02/13/2008 - Emre Sargin
02/06/2008 - Elisa Drelie Gelasca
2008-01-18 Workshop on Bio-Image Informatics
Workshops
2008 - Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining
2006 - Workshop on Multiscale Biological Imaging, Data Mining and Informatics
2005 - BioImage Data Mining and Informatics
Calendar
Calendar
Seminars
2009-03-16: Prof. Inigo Novales
2009-03-09: John Dowling
2009-03-02: John Dowling
2007-07-23 Prof. Benjamin Reese
2007-04-18 Dr. David Rimm
2007-03-12 Prof James S. Duncan
2006-11-09 Christoph Best
2006-01-26 Prof. Badri Roysam
2004-11-12 Arun Majumdar
Project Meetings
2009-03-06 - Alphan Altinok
03/18/2008 - Swapna Joshi
04/23/2008 - Erkan Kiris
02/27/2008 - Dmitry Fedorov
02/20/2008 - John O'Donovan
03/25/2008 - Kris Kvilekval
02/13/2008 - Emre Sargin
02/06/2008 - Elisa Drelie Gelasca
2008-01-18 Workshop on Bio-Image Informatics
Workshops
2008 - Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining
2006 - Workshop on Multiscale Biological Imaging, Data Mining and Informatics
2005 - BioImage Data Mining and Informatics
Seminars
2009-03-16: Prof. Inigo Novales
2009-03-09: John Dowling
2009-03-02: John Dowling
2007-07-23 Prof. Benjamin Reese
2007-04-18 Dr. David Rimm
2007-03-12 Prof James S. Duncan
2006-11-09 Christoph Best
2006-01-26 Prof. Badri Roysam
2004-11-12 Arun Majumdar
Calendar
Calendar
Microscope
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